Basic Information
Locus ID:
gene-BS78_01G144800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11071875 | 11077384 | + | gene-BS78_01G144800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 69,897.65 Da | 49.38 | 92.63 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 122 | 3.33878E-49 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 114 | 1.4E-9 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 212 | 467 | 6.6E-95 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 114 | 1.26E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 131 | 1.8E-14 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 125 | 5.3E-5 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 491 | 93.998093 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 13.797939 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 612 | - | - |
| Coils | Coil | Coil | 532 | 566 | - | - |
| Coils | Coil | Coil | 606 | 626 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_034572905.1 | BTB/POZ domain-containing protein At1g30440 isoform X1 [Setaria viridis] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6SV90 | NPH3 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G156800v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology