Basic Information
Locus ID:
gene-BS78_01G137200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10507810 | 10512312 | + | gene-BS78_01G137200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 74,341.71 Da | 65.31 | 64.09 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 262 | 303 | 2.41633E-11 | - |
| Pfam | PF08783 | DWNN domain | 4 | 81 | 2.4E-20 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 172 | 190 | 3.4E-7 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 326 | 4.71E-9 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 171 | 218 | 1.99E-7 | IPR036875 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 334 | 4.4E-9 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 196 | 240 | 5.1E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 9.3E-19 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 168 | 195 | 5.6E-5 | - |
| SMART | SM01180 | DWNN_2 | 4 | 82 | 8.1E-31 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 202 | 218 | 0.11 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 176 | 192 | 0.1 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 82 | 15.208768 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 203 | 217 | 8.581337 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 583 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 0 |
| RefSeq | XP_025818471.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Panicum hallii] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MRG2 | CCHC-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS9381 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology