Basic Information
Locus ID:
gene-BS78_01G108600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8118603 | 8123221 | - | gene-BS78_01G108600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 58,433.33 Da | 48.32 | 67.62 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 321 | 349 | 2.4E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 360 | 388 | 1.3E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 395 | 416 | 5.1E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 313 | 347 | 1.73E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 390 | 423 | 3.85E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 357 | 390 | 1.65E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 391 | 423 | 5.9E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 313 | 350 | 8.1E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 352 | 390 | 6.4E-15 | - |
| SMART | SM00547 | zf_4 | 362 | 386 | 4.9E-8 | IPR001876 |
| SMART | SM00547 | zf_4 | 323 | 347 | 5.3E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 395 | 419 | 3.3E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 321 | 350 | 9.461374 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 360 | 389 | 10.353458 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 393 | 422 | 9.822725 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 364 | 383 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 325 | 344 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 397 | 416 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 530 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_025796160.1 | zinc finger protein VAR3, chloroplastic-like [Panicum hallii] | 0 |
| TrEMBL | A0A811N3G9 | Zinc finger protein VAR3, chloroplastic OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS9654 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology