Basic Information
Locus ID:
gene-BS78_01G106500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7978479 | 7981893 | - | gene-BS78_01G106500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 59,711.89 Da | 59.95 | 69.68 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 313 | 336 | 1.5E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 269 | 293 | 2.7E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 262 | 294 | 1.26E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 308 | 339 | 7.85E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 343 | 376 | 8.3E-6 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 260 | 297 | 6.7E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 306 | 342 | 2.2E-12 | - |
| SMART | SM00547 | zf_4 | 271 | 295 | 2.8E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 348 | 372 | 0.25 | IPR001876 |
| SMART | SM00547 | zf_4 | 315 | 339 | 1.7E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 269 | 298 | 9.845309 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 346 | 375 | 8.783842 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 313 | 342 | 9.393621 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 350 | 369 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 317 | 336 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 273 | 292 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 57 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_002466578.2 | uncharacterized protein LOC8063385 [Sorghum bicolor] | 0 |
| TrEMBL | A0A1B6QIJ2 | Zinc finger protein VAR3, chloroplastic OS=Sorghum bicolor OX=4558 GN=SORBI_3001G116800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology