Basic Information
Locus ID:
gene-BS78_01G103400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7775011 | 7778539 | + | gene-BS78_01G103400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 78,862.74 Da | 51.97 | 84.74 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 655 | 700 | 1.46174E-22 | - |
| Pfam | PF00628 | PHD-finger | 656 | 700 | 1.4E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 645 | 700 | 7.09E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 640 | 703 | 5.8E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 655 | 701 | 2.0E-7 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 656 | 700 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 502 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66170.1 | RING/FYVE/PHD zinc finger superfamily protein. encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. | 0 |
| RefSeq | XP_025795497.1 | PHD finger protein MALE MEIOCYTE DEATH 1-like [Panicum hallii] | 0 |
| Q7X6Y7 | PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana OX=3702 GN=MMD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3IIN9 | PHD domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G112900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology