Basic Information
Locus ID:
gene-BS78_01G085300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6317604 | 6320305 | + | gene-BS78_01G085300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 25,187.52 Da | 47.21 | 66.55 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 11 | 226 | 1.0E-77 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 117 | 216 | 1.67E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 119 | 229 | 7.3E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 124 | 217 | 25.101009 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 85 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_002463898.1 | auxin-responsive protein IAA13 [Sorghum bicolor] | 0 |
| A2XLV9 | Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1 | 0 | |
| TrEMBL | C5X187 | Auxin-responsive protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G094800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology