Basic Information
Locus ID:
gene-BS78_01G082300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6122532 | 6132371 | - | gene-BS78_01G082300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 148,018.97 Da | 48.68 | 70.38 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1185 | 1246 | 6.5741E-4 | - |
| CDD | cd15539 | PHD1_AIRE | 991 | 1030 | 5.36491E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 912 | 952 | 1.8E-11 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 975 | 1032 | 3.1E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1177 | 1266 | 8.02E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 980 | 1091 | 2.4E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 990 | 1031 | 7.5E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1032 | 1091 | 12.0 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1125 | 1283 | 10.364388 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 988 | 1033 | 10.050699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 991 | 1030 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1296 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1296 | 1352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 582 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_004981793.1 | uncharacterized protein LOC101774449 isoform X1 [Setaria italica] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7C154 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G086600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology