Basic Information
Locus ID:
gene-BS78_01G075000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5579631 | 5586927 | - | gene-BS78_01G075000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 54,614.76 Da | 46.17 | 76.66 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 426 | 496 | 8.73951E-32 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 259 | 0.18 | IPR001680 |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 425 | 494 | 4.7E-28 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 426 | 496 | 1.83E-24 | IPR012340 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 291 | 4.03E-37 | IPR036322 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 355 | 433 | 7.52E-27 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 340 | 425 | 1.2E-43 | IPR014722 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 314 | 2.7E-59 | IPR015943 |
| Gene3D | G3DSA:2.40.50.140 | - | 426 | 499 | 3.0E-33 | - |
| SMART | SM00320 | WD40_4 | 41 | 80 | 50.0 | IPR001680 |
| SMART | SM01376 | eIF_5a_2 | 425 | 494 | 7.3E-34 | IPR020189 |
| SMART | SM00320 | WD40_4 | 1 | 40 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 259 | 0.037 | IPR001680 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 357 | 493 | 2.0E-40 | IPR001884 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 124 | 9.731054 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 108 | 122 | - | IPR019775 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 390 | 397 | - | IPR019769 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_039140600.1 | mitotic checkpoint protein BUB3.3-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| P24922 | Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1 | 0 | |
| TrEMBL | B8AK76 | eIF-5a domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_13610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology