Basic Information
Locus ID:
gene-BS78_01G064900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 4834110 | 4838382 | - | gene-BS78_01G064900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 108,961.48 Da | 34.70 | 99.41 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 354 | 374 | 1.8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 258 | 317 | 1.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 500 | 558 | 4.5E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 690 | 960 | 5.3E-45 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 58 | 2.0E-12 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 684 | 960 | 1.62E-73 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 68 | 389 | 1.33E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 351 | 614 | 6.12E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 129 | 1.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 339 | 617 | 5.6E-86 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 220 | 338 | 3.0E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 130 | 219 | 2.3E-25 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 767 | 978 | 3.3E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 653 | 766 | 8.8E-25 | - |
| SMART | SM00220 | serkin_6 | 689 | 937 | 1.1E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 424 | 448 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 569 | 592 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 280 | 303 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 159 | 9.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 353 | 376 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 110 | 133 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 328 | 352 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 304 | 326 | 300.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 689 | 963 | 36.414143 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 811 | 823 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 963 | 1021 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1021 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65700.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | 0 |
| RefSeq | XP_025795136.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Panicum hallii] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3IHQ6 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G069600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology