Basic Information
Locus ID:
gene-BS78_01G037200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2692281 | 2696041 | + | gene-BS78_01G037200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 60,838.96 Da | 49.29 | 52.23 | -1.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 484 | 515 | 7.9E-8 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 386 | 468 | 6.1E-17 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 386 | 468 | 1.0E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 561 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 383 | - | - |
| Coils | Coil | Coil | 375 | 417 | - | - |
| Coils | Coil | Coil | 420 | 449 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_025795649.1 | uncharacterized protein LOC112875862 [Panicum hallii] | 0 |
| TrEMBL | A0A2S3IH08 | PAPA-1 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G038400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology