Basic Information
Locus ID:
gene-BS78_01G001500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 339730 | 346382 | - | gene-BS78_01G001500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 82,483.23 Da | 42.14 | 71.78 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 479 | 760 | 1.7471E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 549 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 480 | 507 | 0.0089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 646 | 677 | 4.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 729 | 760 | 0.081 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 34 | 8.1E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 557 | 592 | 7.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 477 | 760 | 2.6E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 452 | 635 | 7.0E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 636 | 760 | 1.5E-25 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0014 | IPR006594 |
| SMART | SM00320 | WD40_4 | 510 | 549 | 6.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 593 | 4.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 507 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 719 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 760 | 9.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 677 | 3.9E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 560 | 594 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 560 | 602 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.432788 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 646 | 686 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 728 | 760 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 517 | 558 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 475 | 510 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 517 | 549 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 728 | 760 | 12.881143 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 319 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7BY28 | LisH domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G001500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology