Basic Information
Locus ID:
gene:TRIDC7BG075480
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 747427931 | 747429404 | + | gene:TRIDC7BG075480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 9,301.66 Da | 33.18 | 95.06 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 3 | 40 | 6.1E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 74 | 3.5E-12 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 82 | 9.0E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 40 | 6.0E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 8 | 40 | 12.551949 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 8 | 49 | 15.253835 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29860.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development. | 0 |
| RefSeq | XP_040259340.1 | uncharacterized protein LOC109769424 [Aegilops tauschii subsp. strangulata] | 0 |
| O35142 | Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A453E192 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG075480.