Basic Information
Locus ID:
gene:TRIDC7BG071790
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 724446170 | 724473903 | + | gene:TRIDC7BG071790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 69,420.55 Da | 44.97 | 87.80 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 310 | 562 | 3.20742E-44 | - |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 166 | 264 | 2.6E-14 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 1 | 130 | 2.9E-23 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 429 | 468 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 387 | 424 | 9.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 512 | 6.1E-4 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 144 | 2.19E-32 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 301 | 564 | 6.8E-51 | IPR036322 |
| SUPERFAMILY | SSF49354 | PapD-like | 159 | 289 | 2.88E-20 | IPR008962 |
| Gene3D | G3DSA:2.130.10.10 | - | 311 | 591 | 1.4E-72 | IPR015943 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 159 | 286 | 1.4E-24 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 158 | 4.8E-35 | - |
| SMART | SM00320 | WD40_4 | 471 | 512 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 552 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 337 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 424 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 380 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 468 | 3.9E-8 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 135 | 20.287249 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 163 | 283 | 17.05101 | IPR000535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 478 | 521 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 478 | 514 | 10.15287 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 435 | 471 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 435 | 477 | 13.750016 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 499 | 513 | - | IPR019775 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_037464561.1 | uncharacterized protein LOC119336611 isoform X3 [Triticum dicoccoides] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6RSR3 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG071790.