Basic Information
Locus ID:
gene:TRIDC7BG068470
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Transcription initiation factor TFIID subunit 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 706627518 | 706641863 | + | gene:TRIDC7BG068470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 197,173.22 Da | 51.83 | 74.97 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00439 | Bromodomain | 1639 | 1715 | 6.0E-20 | IPR001487 |
| Pfam | PF09247 | TATA box-binding protein binding | 10 | 54 | 8.8E-9 | IPR009067 |
| Pfam | PF12157 | Protein of unknown function (DUF3591) | 543 | 1108 | 3.6E-126 | IPR022591 |
| Pfam | PF00240 | Ubiquitin family | 630 | 697 | 9.6E-7 | IPR000626 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1627 | 1740 | 6.02E-28 | IPR036427 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 620 | 698 | 4.47E-12 | IPR029071 |
| SUPERFAMILY | SSF47055 | TAF(II)230 TBP-binding fragment | 17 | 55 | 8.5E-7 | IPR036741 |
| Gene3D | G3DSA:3.10.20.90 | - | 620 | 698 | 8.8E-11 | - |
| Gene3D | G3DSA:1.20.920.10 | - | 1597 | 1749 | 3.7E-30 | IPR036427 |
| SMART | SM00297 | bromo_6 | 1627 | 1737 | 8.3E-27 | IPR001487 |
| SMART | SM00213 | ubq_7 | 626 | 698 | 2.3E-10 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 626 | 696 | 12.574503 | IPR000626 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 1647 | 1717 | 18.5432 | IPR001487 |
| ProSitePatterns | PS00633 | Bromodomain signature. | 1652 | 1709 | - | IPR018359 |
| PRINTS | PR00503 | Bromodomain signature | 1698 | 1717 | 1.7E-8 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1680 | 1698 | 1.7E-8 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1664 | 1680 | 1.7E-8 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1562 | 1630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1271 | 1285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1582 | 1614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1271 | 1297 | - | - |
| Coils | Coil | Coil | 1732 | 1751 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32750.1 | HAC13 protein (HAC13). This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. | 0 |
| RefSeq | XP_037463512.1 | transcription initiation factor TFIID subunit 1-like isoform X1 [Triticum dicoccoides] | 0 |
| Q67W65 | Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6SSR4 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG068470.