Basic Information
Locus ID:
gene:TRIDC7BG068450
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Transcription initiation factor TFIID subunit 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 706538102 | 706555915 | + | gene:TRIDC7BG068450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 202,777.00 Da | 50.62 | 73.15 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04369 | Bromodomain | 1693 | 1792 | 1.18515E-26 | - |
| Pfam | PF12157 | Protein of unknown function (DUF3591) | 560 | 1128 | 2.5E-130 | IPR022591 |
| Pfam | PF00439 | Bromodomain | 1698 | 1775 | 5.3E-21 | IPR001487 |
| Pfam | PF09247 | TATA box-binding protein binding | 22 | 69 | 1.7E-8 | IPR009067 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 639 | 715 | 4.47E-11 | IPR029071 |
| SUPERFAMILY | SSF47055 | TAF(II)230 TBP-binding fragment | 31 | 66 | 1.44E-6 | IPR036741 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1685 | 1800 | 1.96E-27 | IPR036427 |
| Gene3D | G3DSA:1.20.920.10 | - | 1656 | 1807 | 1.1E-28 | IPR036427 |
| Gene3D | G3DSA:3.10.20.90 | - | 636 | 715 | 1.8E-10 | - |
| SMART | SM00213 | ubq_7 | 643 | 715 | 4.1E-8 | IPR000626 |
| SMART | SM00297 | bromo_6 | 1687 | 1797 | 2.5E-25 | IPR001487 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 1707 | 1777 | 17.936001 | IPR001487 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 643 | 713 | 12.313198 | IPR000626 |
| ProSitePatterns | PS00633 | Bromodomain signature. | 1712 | 1769 | - | IPR018359 |
| PRINTS | PR00503 | Bromodomain signature | 1724 | 1740 | 2.9E-8 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1758 | 1777 | 2.9E-8 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 1740 | 1758 | 2.9E-8 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1643 | 1674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1630 | 1689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1266 | 1308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1279 | 1296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1585 | 1609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1564 | 1609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1530 | 1549 | - | - |
| Coils | Coil | Coil | 207 | 227 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32750.1 | HAC13 protein (HAC13). This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. | 0 |
| RefSeq | XP_037465598.1 | transcription initiation factor TFIID subunit 1-like [Triticum dicoccoides] | 0 |
| Q67W65 | Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6SP06 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG068450.