HalophFGD

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Basic Information
Locus ID: gene:TRIDC7BG067260
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: Utp13 specific WD40 associated domain
Maps and Mapping Data
Chromosome Start End Strand ID
7B 701035776 701041114 - gene:TRIDC7BG067260
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.34 89,951.51 Da 38.31 87.23 -0.17
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00200 WD40 8 418 5.08586E-55 -
CDD cd00200 WD40 294 596 5.695E-64 -
Pfam PF00400 WD domain, G-beta repeat 381 418 6.8E-6 IPR001680
Pfam PF00400 WD domain, G-beta repeat 14 40 0.014 IPR001680
Pfam PF08625 Utp13 specific WD40 associated domain 619 752 3.3E-44 IPR013934
Pfam PF00400 WD domain, G-beta repeat 45 82 5.2E-5 IPR001680
Pfam PF00400 WD domain, G-beta repeat 480 512 4.5E-5 IPR001680
Pfam PF00400 WD domain, G-beta repeat 88 126 7.6E-7 IPR001680
Pfam PF00400 WD domain, G-beta repeat 441 471 1.9E-4 IPR001680
Pfam PF00400 WD domain, G-beta repeat 336 376 7.2E-6 IPR001680
Pfam PF00400 WD domain, G-beta repeat 131 168 2.1E-5 IPR001680
Pfam PF00400 WD domain, G-beta repeat 517 554 6.1E-5 IPR001680
SUPERFAMILY SSF50978 WD40 repeat-like 9 281 2.29E-55 IPR036322
SUPERFAMILY SSF50978 WD40 repeat-like 290 596 2.33E-72 IPR036322
Gene3D G3DSA:2.130.10.10 - 3 287 3.3E-57 IPR015943
Gene3D G3DSA:2.130.10.10 - 288 474 2.4E-38 IPR015943
Gene3D G3DSA:2.130.10.10 - 476 642 1.6E-38 IPR015943
SMART SM00320 WD40_4 558 597 5.0E-5 IPR001680
SMART SM00320 WD40_4 291 331 5.6 IPR001680
SMART SM00320 WD40_4 85 126 1.5E-7 IPR001680
SMART SM00320 WD40_4 379 419 8.7E-9 IPR001680
SMART SM00320 WD40_4 516 555 1.6E-8 IPR001680
SMART SM00320 WD40_4 474 513 2.6E-7 IPR001680
SMART SM00320 WD40_4 432 471 1.1E-4 IPR001680
SMART SM00320 WD40_4 129 168 1.8E-8 IPR001680
SMART SM00320 WD40_4 43 82 5.4E-10 IPR001680
SMART SM00320 WD40_4 334 376 5.8E-6 IPR001680
SMART SM00320 WD40_4 1 40 0.0026 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 92 129 11.602863 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 439 472 12.413288 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 50 84 11.611251 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 8 49 13.315579 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 386 418 11.64467 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 8 43 10.15287 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 523 560 10.179234 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 523 564 13.582925 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 50 84 9.704691 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 92 135 14.986489 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 136 177 14.685726 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 341 378 9.361965 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 481 514 11.101955 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 136 170 11.787407 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 341 385 11.978851 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 565 596 10.007177 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 481 522 14.78598 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 439 472 10.337415 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 386 418 9.731054 -
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 155 169 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 69 83 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 363 377 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 113 127 - IPR019775
PRINTS PR00320 G protein beta WD-40 repeat signature 113 127 2.8E-8 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 363 377 2.8E-8 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 406 420 2.8E-8 IPR020472
MobiDBLite mobidb-lite consensus disorder prediction 798 820 - -
MobiDBLite mobidb-lite consensus disorder prediction 760 820 - -
Gene Ontology
Biological Process:
GO:0006364 (rRNA processing)
Molecular Function:
GO:0005515 (protein binding)
Cellular Component:
GO:0032040 (small-subunit processome)
KEGG Pathway
KO Term:
K14555 (U3 small nucleolar RNA-associated protein 13)
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G16750.1 Transducin family protein / WD-40 repeat family protein. Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. 0
RefSeq XP_037465604.1 transducin beta-like protein 3 [Triticum dicoccoides] 0
Swiss-Prot Q9LFE2 Protein TORMOZ EMBRYO DEFECTIVE OS=Arabidopsis thaliana OX=3702 GN=TOZ PE=1 SV=1 0
TrEMBL A0A3B6SK68 Utp13 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC7BG067260.

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