Basic Information
Locus ID:
gene:TRIDC7BG064370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 683758850 | 683761773 | + | gene:TRIDC7BG064370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 42,099.08 Da | 44.16 | 71.56 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 85 | 376 | 2.16654E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 82 | 116 | 3.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 336 | 4.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 125 | 160 | 2.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 252 | 286 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 342 | 376 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 165 | 203 | 1.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 82 | 376 | 1.28E-82 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 77 | 379 | 5.1E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 121 | 160 | 6.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 286 | 4.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 203 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 244 | 0.06 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 336 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 117 | 1.4E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 85 | 116 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 346 | 379 | 9.256512 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 288 | 12.815584 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 379 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 85 | 116 | 11.73468 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 128 | 165 | 13.105581 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 128 | 169 | 17.22551 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 170 | 212 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 288 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 219 | 253 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 345 | 10.575287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 323 | 337 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 147 | 161 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 190 | 204 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 190 | 204 | 2.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 273 | 287 | 2.8E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 147 | 161 | 2.8E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43770.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_044432162.1 | U5 small nuclear ribonucleoprotein 40 kDa protein-like [Triticum aestivum] | 0 |
| Q2HJH6 | U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1 | 0 | |
| TrEMBL | M8CYH3 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG064370.