Basic Information
Locus ID:
gene:TRIDC7BG060340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Vacuolar protein sorting-associated protein 8 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 652486234 | 652498394 | - | gene:TRIDC7BG060340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 200,047.61 Da | 46.50 | 86.81 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12816 | Golgi CORVET complex core vacuolar protein 8 | 931 | 1116 | 1.8E-55 | IPR025941 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 459 | 508 | 6.9E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 412 | 732 | 9.62E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 573 | 1.0E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 497 | 536 | 65.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 494 | 0.0014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 503 | 10.742378 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00800.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037467323.1 | vacuolar protein sorting-associated protein 8 homolog [Triticum dicoccoides] | 0 |
| Q0P5W1 | Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus OX=10090 GN=Vps8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SMC8 | Transducin family protein / WD-40 repeat family protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG060340.