Basic Information
Locus ID:
gene:TRIDC7BG055270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 611404983 | 611415188 | + | gene:TRIDC7BG055270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 38,481.10 Da | 29.39 | 72.84 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 12 | 345 | 2.79852E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 238 | 4.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 69 | 98 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 53 | 4.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 142 | 4.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 187 | 6.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 344 | 1.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 344 | 8.35E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 350 | 7.5E-115 | IPR015943 |
| SMART | SM00320 | WD40_4 | 194 | 238 | 2.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 345 | 2.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 188 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 293 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 99 | 2.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 1.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 9 | 53 | 4.6E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 347 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 16 | 53 | 9.335602 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 352 | 11.681953 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 187 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 16 | 53 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 67 | 99 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 187 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 238 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 111 | 152 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 238 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 70 | 99 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 111 | 145 | 12.077406 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 130 | 144 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 332 | 346 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 225 | 239 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 86 | 100 | 7.5E-7 | IPR020472 |
| Hamap | MF_03037 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. | 8 | 348 | 28.728556 | IPR028608 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26060.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037467767.1 | protein CIA1-like [Triticum dicoccoides] | 0 |
| O80990 | Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6SLN1 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG055270.