Basic Information
Locus ID:
gene:TRIDC7BG053210
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Adagio protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 594049020 | 594054265 | + | gene:TRIDC7BG053210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 62,620.62 Da | 42.72 | 83.08 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 12 | 106 | 9.25447E-6 | IPR000014 |
| Pfam | PF07646 | Kelch motif | 478 | 525 | 1.3E-4 | IPR011498 |
| Pfam | PF13426 | PAS domain | 7 | 106 | 4.7E-14 | IPR000014 |
| Pfam | PF13415 | Galactose oxidase, central domain | 319 | 365 | 9.9E-10 | - |
| Pfam | PF13415 | Galactose oxidase, central domain | 368 | 419 | 3.5E-6 | - |
| Pfam | PF12937 | F-box-like | 164 | 204 | 4.4E-8 | IPR001810 |
| Pfam | PF13418 | Galactose oxidase, central domain | 254 | 304 | 3.9E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 154 | 218 | 1.44E-13 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 471 | 555 | 4.32E-11 | IPR015915 |
| SUPERFAMILY | SSF117281 | Kelch motif | 241 | 455 | 2.75E-35 | IPR015915 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 7 | 107 | 6.11E-18 | IPR035965 |
| Gene3D | G3DSA:1.20.1280.50 | - | 155 | 202 | 1.8E-8 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 231 | 472 | 1.6E-42 | IPR015915 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 1 | 118 | 4.6E-42 | - |
| SMART | SM00256 | fbox_2 | 161 | 202 | 0.0052 | IPR001810 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 12 | 106 | 1.2E-6 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 1 | 67 | 12.002666 | IPR000014 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 156 | 202 | 8.676143 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57360.1 | Galactose oxidase/kelch repeat superfamily protein. Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1. | 0 |
| RefSeq | XP_037465214.1 | adagio-like protein 1 [Triticum dicoccoides] | 0 |
| Q5Z8K3 | Adagio-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0694000 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PUS0 | LOV domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG053210.