Basic Information
Locus ID:
gene:TRIDC7BG045770
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 521457042 | 521472077 | - | gene:TRIDC7BG045770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 50,412.31 Da | 51.26 | 64.23 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 413 | 456 | 1.0574E-20 | - |
| Pfam | PF07002 | Copine | 107 | 321 | 6.3E-74 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 411 | 451 | 1.3E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 400 | 452 | 2.3E-7 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 84 | 265 | 4.22E-9 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 389 | 456 | 4.9E-13 | IPR013083 |
| SMART | SM00327 | VWA_4 | 82 | 285 | 3.9E-8 | IPR002035 |
| SMART | SM00184 | ring_2 | 413 | 445 | 3.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 413 | 446 | 11.028731 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 374 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 0 |
| RefSeq | XP_037465306.1 | E3 ubiquitin-protein ligase RGLG3-like [Triticum dicoccoides] | 0 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SPN7 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG045770.