halophFGD

Basic Information

Locus ID: gene:TRIDC7BG044950

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
7B	511702854	511704057	-	gene:TRIDC7BG044950

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.81	29,009.03 Da	64.17	74.79	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05158	RNA polymerase Rpc34 subunit	52	156	4.1E-23	IPR007832
Pfam	PF05158	RNA polymerase Rpc34 subunit	183	262	5.7E-7	IPR007832
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	49	119	1.62E-13	IPR036390
Gene3D	G3DSA:1.10.10.10	-	58	119	9.1E-15	IPR036388
MobiDBLite	mobidb-lite	consensus disorder prediction	1	41	-	-

Gene Ontology

Biological Process:

GO:0006383 (transcription by RNA polymerase III)

Cellular Component:

GO:0005666 (RNA polymerase III complex)

KEGG Pathway

KO Term:

K03025 (DNA-directed RNA polymerase III subunit RPC6)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase) map04623 (Cytosolic DNA-sensing pathway)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G23710.1	DNA binding;DNA-directed RNA polymerases.
RefSeq	XP_037469600.1	DNA-directed RNA polymerase III subunit RPC6-like [Triticum dicoccoides]
Swiss-Prot	Q2T9S3	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1
TrEMBL	A0A3B6SGC5	DNA-directed RNA polymerase III subunit RPC6 OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC7BG044950.