Basic Information
Locus ID:
gene:TRIDC7BG042550
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
CTLH/CRA C-terminal to LisH motif domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 483751217 | 483754771 | + | gene:TRIDC7BG042550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 43,443.42 Da | 49.92 | 87.67 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16652 | dRing_Rmd5p_like | 327 | 375 | 9.59288E-29 | IPR037683 |
| Pfam | PF13445 | RING-type zinc-finger | 329 | 370 | 2.7E-6 | IPR027370 |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 151 | 291 | 3.5E-32 | IPR024964 |
| SUPERFAMILY | SSF57850 | RING/U-box | 324 | 380 | 5.71E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 385 | 7.7E-7 | IPR013083 |
| SMART | SM00757 | toby_final6 | 203 | 297 | 5.3E-26 | IPR013144 |
| SMART | SM00668 | ctlh | 150 | 207 | 1.8E-8 | IPR006595 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 329 | 372 | 14.06483 | IPR044063 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 111 | 143 | 8.298864 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 150 | 207 | 11.302197 | IPR006595 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37880.1 | LisH/CRA/RING-U-box domains-containing protein. | 0 |
| RefSeq | XP_037464894.1 | protein RMD5 homolog isoform X1 [Triticum dicoccoides] | 0 |
| Q9T075 | Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SFU0 | Protein RMD5 homolog A OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG042550.