Basic Information
Locus ID:
gene:TRIDC7BG042420
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 482434640 | 482440122 | + | gene:TRIDC7BG042420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 48,719.12 Da | 51.05 | 97.04 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 317 | 1.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 143 | 0.032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 61 | 91 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 22 | 338 | 6.72E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 249 | 345 | 1.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 186 | 2.4E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 14 | 51 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 317 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 184 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 91 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 143 | 0.0078 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 285 | 326 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 285 | 320 | 10.205597 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 61 | 92 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 61 | 92 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 112 | 152 | 8.570195 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 304 | 318 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 78 | 92 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 130 | 144 | 1.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 78 | 92 | 1.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 1.0E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49180.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037466807.1 | protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9M3B4 | Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SNU6 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG042420.