Basic Information
Locus ID:
gene:TRIDC7BG034360
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 388793829 | 388796499 | - | gene:TRIDC7BG034360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 44,262.56 Da | 47.50 | 72.47 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 362 | 406 | 1.87301E-19 | - |
| Pfam | PF07002 | Copine | 102 | 315 | 2.3E-74 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 359 | 401 | 4.8E-9 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 78 | 260 | 9.45E-9 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 358 | 402 | 1.32E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 345 | 408 | 3.3E-14 | IPR013083 |
| SMART | SM00327 | VWA_4 | 77 | 280 | 1.6E-5 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 363 | 396 | 11.353297 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 44 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79380.1 | Ca(2)-dependent phospholipid-binding protein (Copine) family. | 0 |
| RefSeq | XP_037463288.1 | E3 ubiquitin-protein ligase RGLG4-like isoform X2 [Triticum dicoccoides] | 0 |
| Q9SAL0 | E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SHR8 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG034360.