halophFGD

Basic Information

Locus ID: gene:TRIDC7BG034030

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: Modified RING finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
7B	386428311	386430083	+	gene:TRIDC7BG034030

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.66	36,792.88 Da	37.93	105.99	0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	13	54	2.61481E-25	-
Pfam	PF04564	U-box domain	10	74	2.0E-19	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	7	74	2.24E-26	-
SUPERFAMILY	SSF48371	ARM repeat	100	351	1.6E-23	IPR016024
Gene3D	G3DSA:1.25.10.10	-	97	353	6.0E-23	IPR011989
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	8	80	1.3E-27	IPR013083
SMART	SM00504	Ubox_2	12	76	6.7E-33	IPR003613
ProSiteProfiles	PS51698	U-box domain profile.	8	83	29.024508	IPR003613

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G21350.1	plant U-box 8. Encodes a U-box/ARM repeat protein required fore self-incompatibility.
RefSeq	XP_037468692.1	U-box domain-containing protein 8-like [Triticum dicoccoides]
Swiss-Prot	O81902	U-box domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=PUB8 PE=2 SV=1
TrEMBL	A0A3B6SHQ2	RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC7BG034030.