HalophFGD

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Basic Information
Locus ID: gene:TRIDC7BG032500
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: Ring finger domain
Maps and Mapping Data
Chromosome Start End Strand ID
7B 363517348 363517630 - gene:TRIDC7BG032500
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.04 10,255.62 Da 70.15 85.21 -0.20
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF17123 RING-like zinc finger 59 87 1.1E-9 IPR001841
SUPERFAMILY SSF57850 RING/U-box 52 93 7.46E-13 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 21 94 2.5E-13 IPR013083
KEGG Pathway
KO Term:
K19041 (E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27])
Best hit
Source Best Hit ID Description E-value
TAIR AT2G17730.1 NEP-interacting protein 2. Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. 0
RefSeq XP_048539645.1 RING-H2 finger protein ATL39-like [Triticum urartu] 0
Swiss-Prot Q8GT74 NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 0
TrEMBL A0A3B6TGK3 RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
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BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC7BG032500.

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