Basic Information
Locus ID:
gene:TRIDC7BG032340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 360886364 | 360902588 | + | gene:TRIDC7BG032340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 118,442.79 Da | 45.59 | 79.48 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 918 | 1023 | 9.0159E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 298 | 680 | 2.39209E-76 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 794 | 838 | 9.0E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 913 | 1013 | 1.6E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 301 | 757 | 4.6E-62 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 789 | 841 | 1.91E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 688 | 1070 | 3.1E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 282 | 680 | 4.46E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 695 | 1071 | 1.3E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 452 | 546 | 2.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 564 | 681 | 5.1E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 270 | 383 | 1.8E-6 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 779 | 846 | 1.2E-12 | IPR013083 |
| SMART | SM00487 | ultradead3 | 294 | 661 | 3.5E-15 | IPR014001 |
| SMART | SM00490 | helicmild6 | 930 | 1013 | 6.7E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 795 | 833 | 8.1E-5 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 473 | 642 | 11.96776 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 906 | 1066 | 13.416899 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 795 | 834 | 11.132002 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 810 | 819 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_037465016.1 | helicase-like transcription factor CHR28 isoform X1 [Triticum dicoccoides] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453RW29 | Helicase ATP-binding domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG032340.