Basic Information
Locus ID:
gene:TRIDC7BG031090
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 336246678 | 336257721 | - | gene:TRIDC7BG031090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 125,372.84 Da | 42.02 | 78.87 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 919 | 952 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 483 | 5.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 534 | 1101 | 4.47E-35 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 334 | 658 | 5.27E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 565 | 682 | 1.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 770 | 1056 | 9.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 292 | 564 | 9.7E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 7.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 867 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 140.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.5E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 7.3E-6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 625 | 660 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 436 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.079 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1003 | 1045 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 0.49 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.166971 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 954 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 961 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 449 | 488 | 8.544697 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1138 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_037464465.1 | protein TOPLESS-RELATED PROTEIN 2 [Triticum dicoccoides] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | M8CAY8 | Protein TOPLESS OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG031090.