Basic Information
Locus ID:
gene:TRIDC7BG028320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 273407476 | 273420000 | + | gene:TRIDC7BG028320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 109,438.54 Da | 57.67 | 71.11 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 465 | 767 | 1.09786E-129 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 464 | 766 | 9.2E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 116 | 153 | 5.1E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 113 | 155 | 4.71E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 460 | 770 | 6.28E-85 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 108 | 157 | 2.0E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 457 | 779 | 2.2E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 464 | 769 | 51.790779 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 116 | 153 | 11.689089 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 465 | 480 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 116 | 153 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 875 | - | - |
| Coils | Coil | Coil | 35 | 62 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037463647.1 | ubiquitin carboxyl-terminal hydrolase 19-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6SGM8 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG028320.