Basic Information
Locus ID:
gene:TRIDC7BG024560
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 225863326 | 225868104 | - | gene:TRIDC7BG024560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 116,614.31 Da | 46.09 | 66.03 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 413 | 1040 | 8.1E-41 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 409 | 1042 | 2.55E-67 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 47 | 126 | 6.71E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 344 | 2.24E-6 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 764 | 1049 | 8.0E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 398 | 602 | 2.5E-28 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 412 | 1043 | 34.724438 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 53 | 131 | 10.909605 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 276 | 348 | 11.418695 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 978 | 996 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 413 | 428 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 805 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037466952.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Triticum dicoccoides] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6SFW6 | USP domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG024560.