halophFGD

Basic Information

Locus ID: gene:TRIDC7BG023380

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: E3 ubiquitin-protein ligase UPL5

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
7B	209763661	209769301	+	gene:TRIDC7BG023380

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.05	85,994.37 Da	42.45	96.90	0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	400	751	1.4E-61	IPR000569
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	347	745	6.54E-79	IPR035983
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	349	622	1.0E-50	-
Gene3D	G3DSA:3.30.2160.10	Hect, E3 ligase catalytic domain	515	597	1.0E-50	-
Gene3D	G3DSA:3.30.2410.10	Hect, E3 ligase catalytic domain	640	757	8.9E-28	-
SMART	SM00119	hect_3	369	757	2.0E-46	IPR000569
ProSiteProfiles	PS50237	HECT domain profile.	371	759	62.830154	IPR000569

Gene Ontology

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

KEGG Pathway

KO Term:

K10591 (E3 ubiquitin-protein ligase NEDD4 [EC:2.3.2.26])

Pathway:

ko04011 (MAPK signaling pathway - yeast) map04011 (MAPK signaling pathway - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G12570.1	ubiquitin protein ligase 5. Knock-out mutants showed accelerated senescence of leaves.
RefSeq	XP_037464997.1	E3 ubiquitin-protein ligase UPL5-like [Triticum dicoccoides]
Swiss-Prot	Q9SU29	E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1
TrEMBL	A0A3B6RHQ7	HECT domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC7BG023380.