Basic Information
Locus ID:
gene:TRIDC7BG021300
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 180053784 | 180057154 | - | gene:TRIDC7BG021300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 43,696.46 Da | 34.75 | 68.72 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 356 | 399 | 2.47437E-22 | - |
| Pfam | PF07002 | Copine | 83 | 298 | 4.1E-74 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 353 | 394 | 1.7E-8 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 60 | 242 | 1.82E-10 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 347 | 395 | 9.54E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 333 | 399 | 7.6E-13 | IPR013083 |
| SMART | SM00327 | VWA_4 | 58 | 261 | 5.3E-7 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 356 | 389 | 10.33534 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 0 |
| RefSeq | XP_037468001.1 | E3 ubiquitin-protein ligase RGLG2-like [Triticum dicoccoides] | 0 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SH90 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG021300.