Basic Information
Locus ID:
gene:TRIDC7BG020800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 175122565 | 175128446 | + | gene:TRIDC7BG020800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 83,406.14 Da | 42.38 | 95.56 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 272 | 313 | 1.76049E-21 | - |
| Pfam | PF04564 | U-box domain | 269 | 339 | 3.6E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 264 | 340 | 1.31E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 438 | 704 | 7.82E-18 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 421 | 703 | 6.1E-21 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 345 | 2.8E-23 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 271 | 334 | 2.7E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 267 | 341 | 37.657909 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24330.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037466706.1 | U-box domain-containing protein 6-like [Triticum dicoccoides] | 0 |
| O48700 | U-box domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUB6 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6SHZ9 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG020800.