Basic Information
Locus ID:
gene:TRIDC7BG019280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 160320976 | 160322641 | - | gene:TRIDC7BG019280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 56,105.34 Da | 65.50 | 88.43 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16453 | RING-Ubox | 45 | 73 | 1.35647E-10 | - |
| Pfam | PF04564 | U-box domain | 40 | 109 | 1.1E-9 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 204 | 469 | 4.94E-26 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 116 | 2.03E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 116 | 1.6E-15 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 194 | 333 | 5.9E-19 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 334 | 478 | 7.0E-13 | IPR011989 |
| SMART | SM00185 | arm_5 | 397 | 439 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 224 | 266 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 267 | 309 | 0.85 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 43 | 108 | 1.5E-9 | IPR003613 |
| SMART | SM00185 | arm_5 | 310 | 352 | 7.4 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 39 | 115 | 16.136322 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 235 | 279 | 9.3274 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 321 | 365 | 9.6424 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 278 | 317 | 9.0474 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 168 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47820.1 | PLANT U-BOX 39. | 0 |
| RefSeq | XP_037463393.1 | U-box domain-containing protein 41-like [Triticum dicoccoides] | 0 |
| Q9STT1 | U-box domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=PUB39 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6SHB6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG019280.