Basic Information
Locus ID:
gene:TRIDC7BG018800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 156252169 | 156260758 | + | gene:TRIDC7BG018800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 147,104.73 Da | 46.07 | 82.27 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16529 | WD40 region of Ge1, enhancer of mRNA-decapping protein | 239 | 327 | 4.1E-9 | IPR032401 |
| Pfam | PF16529 | WD40 region of Ge1, enhancer of mRNA-decapping protein | 397 | 552 | 9.1E-11 | IPR032401 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 552 | 2.02E-23 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 239 | 545 | 1.2E-25 | IPR015943 |
| Gene3D | G3DSA:1.10.220.100 | - | 1266 | 1354 | 1.0E-21 | IPR044938 |
| SMART | SM00320 | WD40_4 | 442 | 488 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 320 | 8.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 439 | 1.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 406 | 439 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 406 | 439 | 9.256512 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 324 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 329 | 11.577833 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 852 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 885 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 834 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13300.1 | Transducin/WD40 repeat-like superfamily protein. Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | 0 |
| RefSeq | XP_037465029.1 | enhancer of mRNA-decapping protein 4-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9LTT8 | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SHS2 | Ge1_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG018800.