Basic Information
Locus ID:
gene:TRIDC7BG017290
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 143105811 | 143109870 | - | gene:TRIDC7BG017290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 99,862.71 Da | 51.11 | 97.13 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 222 | 296 | 5.0E-14 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 314 | 591 | 6.72E-32 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 507 | 912 | 3.45E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 301 | 1.71E-21 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 769 | 913 | 4.2E-8 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 309 | 504 | 2.1E-20 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 212 | 305 | 7.1E-19 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 505 | 677 | 2.0E-13 | IPR011989 |
| SMART | SM00185 | arm_5 | 330 | 370 | 260.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 497 | 536 | 43.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 780 | 822 | 0.48 | IPR000225 |
| SMART | SM00185 | arm_5 | 871 | 912 | 1.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 371 | 411 | 42.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 537 | 582 | 8.6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 223 | 291 | 5.5E-19 | IPR003613 |
| SMART | SM00185 | arm_5 | 456 | 496 | 6.1 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 219 | 298 | 23.248266 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 858 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68940.3 | Armadillo/beta-catenin-like repeat family protein. | 0 |
| RefSeq | XP_037465876.1 | putative U-box domain-containing protein 42 [Triticum dicoccoides] | 0 |
| Q9CAA7 | Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=PUB42 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6SB45 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG017290.