Basic Information
Locus ID:
gene:TRIDC7BG016580
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 135938672 | 135945033 | + | gene:TRIDC7BG016580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 42,564.34 Da | 56.49 | 85.48 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.82127E-27 | - |
| Pfam | PF00627 | UBA/TS-N domain | 162 | 200 | 5.2E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 361 | 396 | 5.2E-9 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 279 | 334 | 4.1E-19 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.5E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 5.07E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 149 | 206 | 8.44E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 345 | 402 | 6.08E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 275 | 339 | 4.58E-19 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.2E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 353 | 399 | 7.6E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 155 | 205 | 1.1E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 269 | 335 | 9.1E-25 | IPR036353 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.7E-16 | IPR000626 |
| SMART | SM00165 | uba_6 | 361 | 398 | 4.1E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 162 | 202 | 5.9E-5 | IPR015940 |
| SMART | SM00727 | CBM | 275 | 320 | 1.2E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 404 | 1.3E-107 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 163 | 203 | 12.402311 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 358 | 399 | 14.595147 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.953026 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 371 | 1.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 305 | 327 | 1.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 387 | 402 | 1.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 372 | 386 | 1.9E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_037463751.1 | ubiquitin receptor RAD23d-like [Triticum dicoccoides] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6SBV3 | Ubiquitin receptor RAD23 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG016580.