Basic Information
Locus ID:
gene:TRIDC7BG014970
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 119478327 | 119480147 | + | gene:TRIDC7BG014970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 54,607.62 Da | 55.49 | 86.27 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16453 | RING-Ubox | 39 | 67 | 4.11395E-11 | - |
| Pfam | PF04564 | U-box domain | 35 | 102 | 1.3E-12 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 250 | 287 | 3.1E-4 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 110 | 1.15E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 178 | 455 | 1.31E-26 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 360 | 484 | 3.0E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 105 | 3.1E-17 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 174 | 359 | 1.6E-27 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 37 | 100 | 3.5E-14 | IPR003613 |
| SMART | SM00185 | arm_5 | 248 | 288 | 0.19 | IPR000225 |
| SMART | SM00185 | arm_5 | 383 | 427 | 260.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 289 | 331 | 7.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 207 | 247 | 38.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 33 | 107 | 19.904591 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 259 | 296 | 9.1874 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 300 | 344 | 8.6624 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 520 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47820.1 | PLANT U-BOX 39. | 0 |
| RefSeq | XP_037469479.1 | U-box domain-containing protein 39-like [Triticum dicoccoides] | 0 |
| Q9STT1 | U-box domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=PUB39 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6SBG3 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG014970.