Basic Information
Locus ID:
gene:TRIDC7BG008130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 62677954 | 62685086 | + | gene:TRIDC7BG008130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 90,741.54 Da | 59.28 | 73.33 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 422 | 598 | 1.92556E-6 | - |
| Pfam | PF01426 | BAH domain | 222 | 311 | 9.9E-11 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 142 | 187 | 5.1E-9 | IPR019787 |
| Pfam | PF17872 | AAA lid domain | 618 | 652 | 1.1E-10 | IPR041083 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 446 | 591 | 1.2E-18 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 411 | 654 | 1.07E-38 | IPR027417 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 192 | 5.98E-16 | IPR011011 |
| Gene3D | G3DSA:3.40.50.300 | - | 397 | 594 | 3.7E-62 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 197 | 1.3E-15 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 208 | 379 | 8.6E-28 | IPR043151 |
| Gene3D | G3DSA:1.10.8.60 | - | 595 | 674 | 4.4E-18 | - |
| SMART | SM00439 | BAH_4 | 113 | 314 | 4.4E-9 | IPR001025 |
| SMART | SM00382 | AAA_5 | 441 | 595 | 6.8E-7 | IPR003593 |
| SMART | SM00249 | PHD_3 | 141 | 186 | 1.3E-8 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 188 | 9.632401 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 197 | 314 | 18.310257 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 185 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 33 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12620.1 | origin of replication complex 1B. Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime. | 0 |
| RefSeq | XP_037465179.1 | origin of replication complex subunit 1-like [Triticum dicoccoides] | 0 |
| Q5SMU7 | Origin of replication complex subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ORC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7R1D9 | Origin recognition complex subunit 1 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG008130.