Basic Information
Locus ID:
gene:TRIDC7BG007140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 51729793 | 51735240 | - | gene:TRIDC7BG007140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 51,386.61 Da | 43.86 | 91.12 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 7.9E-13 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.2E-7 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 224 | 250 | 8.9E-4 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 378 | 1.06E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 274 | 1.07E-47 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 151 | 279 | 7.1E-23 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 389 | 9.2E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 148 | 3.8E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 0.028 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 58.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 3.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.2E-6 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 13.06336 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 372 | 9.656702 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.540617 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 9.197662 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.514086 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 10.39236 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.30375 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.24383 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 337 | 346 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 3.0E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 3.0E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_037466141.1 | probable E3 ubiquitin-protein ligase XBOS35 [Triticum dicoccoides] | 0 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6S9Z4 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG007140.