Basic Information
Locus ID:
gene:TRIDC7BG006980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 50733763 | 50735100 | - | gene:TRIDC7BG006980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.21 | 25,212.24 Da | 48.00 | 62.94 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 181 | 225 | 3.46056E-16 | - |
| Pfam | PF13639 | Ring finger domain | 181 | 225 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 229 | 2.21E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 236 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 182 | 224 | 7.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 182 | 225 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 146 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037465272.1 | E3 ubiquitin-protein ligase RDUF1-like isoform X1 [Triticum dicoccoides] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6S9Y2 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG006980.