Basic Information
Locus ID:
gene:TRIDC7BG006490
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 47474306 | 47474707 | - | gene:TRIDC7BG006490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 14,893.88 Da | 26.93 | 105.52 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01806 | Ubl_NEDD8 | 59 | 132 | 5.32756E-44 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 59 | 130 | 2.2E-26 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 1 | 54 | 3.1E-24 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 57 | 6.53E-24 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 58 | 133 | 1.19E-26 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 57 | 3.7E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 58 | 134 | 4.3E-33 | - |
| SMART | SM00213 | ubq_7 | 1 | 52 | 6.9E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 57 | 128 | 2.5E-26 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 57 | 132 | 26.0317 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 56 | 24.159016 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 7 | 32 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 83 | 108 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 12 | 32 | 6.8E-25 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 33 | 54 | 6.8E-25 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 0 |
| RefSeq | XP_037469970.1 | ubiquitin-NEDD8-like protein RUB2 [Triticum dicoccoides] | 0 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453QWX9 | Ubiquitin-NEDD8-like protein RUB2 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG006490.