Basic Information
Locus ID:
gene:TRIDC7BG003270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 23060052 | 23064646 | - | gene:TRIDC7BG003270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 51,776.02 Da | 55.84 | 78.99 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 384 | 425 | 1.1637E-24 | - |
| Pfam | PF04564 | U-box domain | 380 | 450 | 1.3E-20 | IPR003613 |
| Pfam | PF13414 | TPR repeat | 127 | 162 | 9.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 376 | 452 | 2.74E-27 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 119 | 231 | 8.28E-36 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 2 | 108 | 3.8E-23 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 378 | 454 | 3.3E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 114 | 1.9E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 118 | 226 | 2.3E-32 | IPR011990 |
| SMART | SM00504 | Ubox_2 | 383 | 446 | 3.7E-30 | IPR003613 |
| SMART | SM00028 | tpr_5 | 188 | 221 | 0.68 | IPR019734 |
| SMART | SM00028 | tpr_5 | 120 | 153 | 2.0E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 15 | 48 | 0.11 | IPR019734 |
| SMART | SM00028 | tpr_5 | 154 | 187 | 4.4E-4 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 379 | 453 | 41.275803 | IPR003613 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 120 | 153 | 10.0894 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 129 | - | - |
| Coils | Coil | Coil | 258 | 285 | - | - |
| Coils | Coil | Coil | 92 | 125 | - | - |
| Coils | Coil | Coil | 307 | 362 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12400.1 | stress-inducible protein, putative. | 0 |
| RefSeq | XP_037467679.1 | U-box domain-containing protein 70-like [Triticum dicoccoides] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6S992 | U-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG003270.