Basic Information
Locus ID:
gene:TRIDC7BG000320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 1644754 | 1651850 | + | gene:TRIDC7BG000320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.40 | 83,975.69 Da | 44.82 | 65.93 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 480 | 764 | 7.00983E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 596 | 7.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 522 | 553 | 3.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 484 | 511 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 652 | 681 | 5.0E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 11 | 37 | 3.0E-8 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 479 | 764 | 1.65E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 433 | 609 | 2.4E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 610 | 764 | 6.8E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 472 | 511 | 2.7E-4 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 0.0015 | IPR006594 |
| SMART | SM00320 | WD40_4 | 643 | 681 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 557 | 597 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 684 | 723 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 553 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 725 | 764 | 0.2 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.417476 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 564 | 598 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 732 | 764 | 11.210233 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 564 | 606 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 650 | 690 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 520 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 553 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 521 | 553 | 11.5765 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 732 | 764 | 10.706503 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 390 | - | - |
| Coils | Coil | Coil | 329 | 358 | - | - |
| Coils | Coil | Coil | 84 | 104 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_037465574.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X3 [Triticum dicoccoides] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SBC1 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG000320.