Basic Information
Locus ID:
gene:TRIDC7BG000230
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
intracellular transport of virus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7B | 946078 | 947922 | - | gene:TRIDC7BG000230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 27,039.39 Da | 58.01 | 77.72 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 62 | 1.7251E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 72 | 143 | 4.7E-21 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 67 | 2.5E-12 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 66 | 144 | 2.05E-22 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 64 | 4.63E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 69 | 169 | 6.4E-30 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 68 | 9.3E-18 | - |
| SMART | SM00213 | ubq_7 | 70 | 141 | 2.7E-17 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 65 | 6.9E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 70 | 145 | 22.112127 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 69 | 10.375188 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 96 | 121 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 80 | 100 | 1.8E-19 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 122 | 143 | 1.8E-19 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 101 | 121 | 1.8E-19 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 206 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_037468833.1 | polyubiquitin-like [Triticum dicoccoides] | 0 |
| P62972 | Polyubiquitin (Fragment) OS=Xenopus laevis OX=8355 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6UAT4 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7BG000230.