Basic Information
Locus ID:
gene:TRIDC7AG078290
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PLU-1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 726525947 | 726541247 | - | gene:TRIDC7AG078290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 204,511.20 Da | 52.23 | 86.94 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16100 | ARID | 99 | 201 | 1.85179E-17 | - |
| CDD | cd15543 | PHD_RSF1 | 295 | 339 | 2.53928E-20 | - |
| CDD | cd15489 | PHD_SF | 1487 | 1533 | 4.36258E-5 | - |
| Pfam | PF08429 | PLU-1-like protein | 1214 | 1449 | 7.4E-9 | IPR013637 |
| Pfam | PF08429 | PLU-1-like protein | 990 | 1231 | 1.6E-18 | IPR013637 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 466 | 582 | 4.1E-43 | IPR003347 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 100 | 201 | 6.8E-11 | IPR001606 |
| Pfam | PF02928 | C5HC2 zinc finger | 675 | 724 | 1.2E-14 | IPR004198 |
| Pfam | PF02375 | jmjN domain | 31 | 64 | 5.9E-16 | IPR003349 |
| Pfam | PF00628 | PHD-finger | 295 | 341 | 7.8E-10 | IPR019787 |
| SUPERFAMILY | SSF46774 | ARID-like | 80 | 211 | 3.01E-19 | IPR036431 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 282 | 340 | 7.53E-16 | IPR011011 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 388 | 616 | 2.39E-32 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1734 | 1788 | 9.3E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1480 | 1535 | 6.42E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 286 | 332 | 7.8E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1728 | 1789 | 1.2E-14 | IPR013083 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 22 | 103 | 1.3E-21 | - |
| Gene3D | G3DSA:1.10.150.60 | - | 104 | 220 | 1.6E-12 | IPR036431 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 333 | 719 | 1.1E-102 | - |
| SMART | SM01014 | ARID_2 | 94 | 201 | 6.7E-13 | - |
| SMART | SM00249 | PHD_3 | 1490 | 1534 | 1.0 | IPR001965 |
| SMART | SM00501 | bright_3 | 98 | 206 | 6.6E-9 | IPR001606 |
| SMART | SM00545 | JmjN_1 | 29 | 70 | 8.0E-23 | IPR003349 |
| SMART | SM00249 | PHD_3 | 1745 | 1788 | 9.0E-7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 294 | 340 | 6.3E-12 | IPR001965 |
| SMART | SM00558 | cupin_9 | 433 | 599 | 1.0E-66 | IPR003347 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 97 | 205 | 17.742182 | IPR001606 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 292 | 342 | 10.1931 | IPR019787 |
| ProSiteProfiles | PS51183 | JmjN domain profile. | 30 | 71 | 18.719316 | IPR003349 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 433 | 599 | 37.890427 | IPR003347 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | 6.0 | - |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1743 | 1790 | 9.1073 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1746 | 1787 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 295 | 339 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 270 | - | - |
| Coils | Coil | Coil | 1115 | 1135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63490.2 | - | 0 |
| RefSeq | XP_037459676.1 | lysine-specific demethylase 5B-like [Triticum dicoccoides] | 0 |
| F4I240 | Lysine-specific demethylase JMJ17 OS=Arabidopsis thaliana OX=3702 GN=JMJ17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RTI0 | Lysine-specific demethylase 5B OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG078290.