Basic Information
Locus ID:
gene:TRIDC7AG076340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 716191791 | 716211106 | + | gene:TRIDC7AG076340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.01 | 70,708.55 Da | 62.14 | 86.73 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 279 | 321 | 1.47385E-24 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 398 | 436 | 1.6E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 275 | 346 | 1.1E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 638 | 3.25E-41 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 275 | 349 | 8.24E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 274 | 348 | 6.8E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 349 | 644 | 2.2E-45 | IPR011989 |
| SMART | SM00185 | arm_5 | 520 | 560 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 397 | 437 | 0.0082 | IPR000225 |
| SMART | SM00185 | arm_5 | 479 | 519 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 354 | 395 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 438 | 478 | 43.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 278 | 341 | 3.4E-31 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 366 | 408 | 9.3974 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 408 | 450 | 11.4974 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 274 | 348 | 38.586708 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42340.1 | Plant U-Box 15. | 0 |
| RefSeq | XP_037460583.1 | U-box domain-containing protein 15-like isoform X2 [Triticum dicoccoides] | 0 |
| Q681N2 | U-box domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=PUB15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8R7VEF1 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG076340.