Basic Information
Locus ID:
gene:TRIDC7AG072550
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Utp21 specific WD40 associated putative domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 696605158 | 696613019 | - | gene:TRIDC7AG072550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 101,539.01 Da | 49.54 | 88.32 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04192 | Utp21 specific WD40 associated putative domain | 672 | 902 | 1.4E-64 | IPR007319 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 191 | 277 | 7.6E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 342 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 550 | 586 | 4.9E-11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 302 | 4.21E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 226 | 627 | 6.77E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 314 | 1.1E-228 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 630 | 1.1E-228 | IPR015943 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 0.0081 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 254 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 120 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 586 | 2.0E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 210 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 628 | 56.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 544 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 297 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 465 | 503 | 0.46 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 296 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 471 | 512 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 296 | 9.414692 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 554 | 588 | 13.501034 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 554 | 595 | 16.891327 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 573 | 587 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 677 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04940.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037458301.1 | U3 small nucleolar RNA-associated protein 21 homolog [Triticum dicoccoides] | 0 |
| O14053 | U3 small nucleolar RNA-associated protein 21 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1672.07 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6RNY3 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG072550.