Basic Information
Locus ID:
gene:TRIDC7AG072340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Transcription initiation factor TFIID subunit 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7A | 696004077 | 696015978 | + | gene:TRIDC7AG072340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 148,997.72 Da | 52.38 | 75.77 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 669 | 736 | 1.1E-6 | IPR000626 |
| Pfam | PF12157 | Protein of unknown function (DUF3591) | 582 | 1147 | 7.9E-126 | IPR022591 |
| Pfam | PF09247 | TATA box-binding protein binding | 50 | 94 | 8.4E-9 | IPR009067 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 660 | 737 | 1.25E-11 | IPR029071 |
| SUPERFAMILY | SSF47055 | TAF(II)230 TBP-binding fragment | 57 | 95 | 1.31E-6 | IPR036741 |
| Gene3D | G3DSA:3.10.20.90 | - | 658 | 737 | 5.4E-11 | - |
| SMART | SM00213 | ubq_7 | 665 | 737 | 5.6E-9 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 665 | 735 | 12.487402 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1309 | 1334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1309 | 1325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 131 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32750.1 | HAC13 protein (HAC13). This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. | 0 |
| RefSeq | XP_048541415.1 | transcription initiation factor TFIID subunit 1-like isoform X2 [Triticum urartu] | 0 |
| Q67W65 | Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6RRV1 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC7AG072340.